List Read Sets
omics_list_read_sets | R Documentation |
Retrieves a list of read sets¶
Description¶
Retrieves a list of read sets.
Usage¶
Arguments¶
sequenceStoreId
[required] The jobs' sequence store ID.
maxResults
The maximum number of read sets to return in one page of results.
nextToken
Specify the pagination token from a previous request to retrieve the next page of results.
filter
A filter to apply to the list.
Value¶
A list with the following syntax:
list(
nextToken = "string",
readSets = list(
list(
id = "string",
arn = "string",
sequenceStoreId = "string",
subjectId = "string",
sampleId = "string",
status = "ARCHIVED"|"ACTIVATING"|"ACTIVE"|"DELETING"|"DELETED"|"PROCESSING_UPLOAD"|"UPLOAD_FAILED",
name = "string",
description = "string",
referenceArn = "string",
fileType = "FASTQ"|"BAM"|"CRAM"|"UBAM",
sequenceInformation = list(
totalReadCount = 123,
totalBaseCount = 123,
generatedFrom = "string",
alignment = "string"
),
creationTime = as.POSIXct(
"2015-01-01"
),
statusMessage = "string",
creationType = "IMPORT"|"UPLOAD",
etag = list(
algorithm = "FASTQ_MD5up"|"BAM_MD5up"|"CRAM_MD5up"|"FASTQ_SHA256up"|"BAM_SHA256up"|"CRAM_SHA256up"|"FASTQ_SHA512up"|"BAM_SHA512up"|"CRAM_SHA512up",
source1 = "string",
source2 = "string"
)
)
)
)
Request syntax¶
svc$list_read_sets(
sequenceStoreId = "string",
maxResults = 123,
nextToken = "string",
filter = list(
name = "string",
status = "ARCHIVED"|"ACTIVATING"|"ACTIVE"|"DELETING"|"DELETED"|"PROCESSING_UPLOAD"|"UPLOAD_FAILED",
referenceArn = "string",
createdAfter = as.POSIXct(
"2015-01-01"
),
createdBefore = as.POSIXct(
"2015-01-01"
),
sampleId = "string",
subjectId = "string",
generatedFrom = "string",
creationType = "IMPORT"|"UPLOAD"
)
)